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1

Efficient Virus-Mediated Genome Editing in Plants Using the CRISPR/Cas9 System

Ali, Zahir, Abul-faraj, Aala, Li, Lixin, Ghosh, Neha, Piatek, Marek, Mahjoub, Ali, Aouida, Mustapha, Piatek, Agnieszka, Baltes, Nicholas J., Voytas, Daniel F., Dinesh-Kumar, Savithramma, Mahfouz, Magd

Journal:

Molecular Plant

Year:

2015

Language:

english

File:

PDF, 650 KB

english, 2015

2

Mechanisms of plant resistance to viruses

Soosaar, Jennifer L. M., Burch-Smith, Tessa M., Dinesh-Kumar, Savithramma P.

Journal:

Nature Reviews Microbiology

Year:

2005

Language:

english

File:

PDF, 528 KB

english, 2005

3

Type I J-Domain NbMIP1 Proteins Are Required for Both Tobacco Mosaic Virus Infection and Plant Innate Immunity

Du, Yumei, Zhao, Jinping, Chen, Tianyuan, Liu, Qi, Zhang, Haili, Wang, Yan, Hong, Yiguo, Xiao, Fangming, Zhang, Ling, Shen, Qianhua, Liu, Yule, Dinesh-Kumar, Savithramma P.

Journal:

Year:

2013

Language:

english

File:

PDF, 6.05 MB

english, 2013

4

Arabidopsis RTNLB1 and RTNLB2 Reticulon-Like Proteins Regulate Intracellular Trafficking and Activity of the FLS2 Immune Receptor

Hyoung Yool Lee, Christopher Hyde Bowen, George Viorel Popescu, Hong-Gu Kang, Naohiro Kato, Shisong Ma, Savithramma Dinesh-Kumar, Michael Snyder and Sorina Claudia Popescu

Journal:

Year:

2011

Language:

english

File:

PDF, 3.47 MB

english, 2011

5

A Ligation-Independent Cloning Tobacco Rattle Virus Vector for High-Throughput Virus-Induced Gene Silencing Identifies Roles for NbMADS4-1 and -2 in Floral Development

Yiyu Dong, Tessa M. Burch-Smith, Yule Liu, Padmavathi Mamillapalli and Savithramma P. Dinesh-Kumar

Journal:

PLANT PHYSIOLOGY

Year:

2007

Language:

english

File:

PDF, 1.89 MB

english, 2007

6

A Plant Immune Receptor Adopts a Two-Step Recognition Mechanism to Enhance Viral Effector Perception

Li, Jia, Huang, Haining, Zhu, Min, Huang, Shen, Zhang, Wenhua, Dinesh-Kumar, Savithramma P., Tao, Xiaorong

Journal:

Molecular Plant

Year:

2019

Language:

english

File:

PDF, 2.36 MB

english, 2019

7

Blocking tombusvirus replication through the antiviral functions of DDX17-like RH30 DEAD-box helicase

Wu, Cheng-Yu, Nagy, Peter D., Dinesh-Kumar, Savithramma P.

Journal:

Year:

2019

Language:

english

File:

PDF, 12.23 MB

english, 2019

8

Blocking tombusvirus replication through the antiviral functions of DDX17-like RH30 DEAD-box helicase

Wu, Cheng-Yu, Nagy, Peter D., Dinesh-Kumar, Savithramma P.

Journal:

Year:

2019

File:

PDF, 12.23 MB

2019

9

Multiplexed heritable gene editing using RNA viruses and mobile single guide RNAs

Ellison, Evan E., Nagalakshmi, Ugrappa, Gamo, Maria Elena, Huang, Pin-jui, Dinesh-Kumar, Savithramma, Voytas, Daniel F.

Journal:

Year:

2020

File:

PDF, 4.54 MB

2020

10

SGT1 positively regulates the process of plant cell death during both compatible and incompatible plant–pathogen interactions

KERI WANG, SRINIVASA RAO UPPALAPATI, XIAOHONG ZHU, SAVITHRAMMA P. DINESH-KUMAR, KIRANKUMAR S. MYSORE

Journal:

Molecular Plant Pathology

Year:

2010

Language:

english

File:

PDF, 2.20 MB

english, 2010

11

An alternative tandem affinity purification strategy applied to Arabidopsis protein complex isolation

Vicente Rubio, Yunping Shen, Yusuke Saijo, Yule Liu, Giuliana Gusmaroli, Savithramma P. Dinesh-Kumar, Xing Wang Deng

Journal:

The Plant Journal

Year:

2005

Language:

english

File:

PDF, 505 KB

english, 2005

12

Autophagy and plant innate immunity

Montrell Seay, Shalaka Patel, Savithramma P. Dinesh-Kumar

Journal:

Cellular Microbiology

Year:

2006

Language:

english

File:

PDF, 319 KB

english, 2006

13

Function of endoplasmic reticulum calcium ATPase in innate immunity-mediated programmed cell death

Zhu, Xiaohong, Caplan, Jeffrey, Mamillapalli, Padmavathi, Czymmek, Kirk, Dinesh-Kumar, Savithramma P

Journal:

The EMBO Journal

Year:

2010

Language:

english

File:

PDF, 2.35 MB

english, 2010

14

Plant NB-LRR Immune Receptors: From Recognition to Transcriptional Reprogramming

Jeffrey Caplan, Meenu Padmanabhan, Savithramma P. Dinesh-Kumar

Journal:

Cell Host & Microbe

Year:

2008

Language:

english

File:

PDF, 856 KB

english, 2008

15

The conformational and subcellular compartmental dance of plant NLRs during viral recognition and defense signaling

Padmanabhan, Meenu S, Dinesh-Kumar, Savithramma P

Journal:

Current Opinion in Microbiology

Year:

2014

Language:

english

File:

PDF, 760 KB

english, 2014

16

AtGGM2014, anArabidopsisgene co-expression network for functional studies

Ma, ShiSong, Bohnert, Hans J., Dinesh-Kumar, Savithramma P.

Journal:

SCIENCE CHINA Life Sciences

Year:

2015

Language:

english

File:

PDF, 1.97 MB

english, 2015

17

A Novel Role for the TIR Domain in Association with Pathogen-Derived Elicitors

Burch-Smith, Tessa M., Schiff, Michael, Caplan, Jeffrey L., Tsao, Jeffrey, Czymmek, Kirk, Dinesh-Kumar, Savithramma P.

Journal:

Year:

2007

Language:

english

File:

PDF, 846 KB

english, 2007

18

Incorporating Motif Analysis into Gene Co-expression Networks Reveals Novel Modular Expression Pattern and New Signaling Pathways

Ma, Shisong, Shah, Smit, Bohnert, Hans J., Snyder, Michael, Dinesh-Kumar, Savithramma P., Copenhaver, Gregory P.

Journal:

Year:

2013

Language:

english

File:

PDF, 10.39 MB

english, 2013

19

Novel Disease Susceptibility Factors for Fungal Necrotrophic Pathogens in Arabidopsis

Dobón, Albor, Canet, Juan Vicente, García-Andrade, Javier, Angulo, Carlos, Neumetzler, Lutz, Persson, Staffan, Vera, Pablo, Dinesh-Kumar, Savithramma P.

Journal:

Year:

2015

Language:

english

File:

PDF, 3.66 MB

english, 2015

20

Chloroplast Stromules Function during Innate Immunity

Caplan, Jeffrey L., Kumar, Amutha Sampath, Park, Eunsook, Padmanabhan, Meenu S., Hoban, Kyle, Modla, Shannon, Czymmek, Kirk, Dinesh-Kumar, Savithramma P.

Journal:

Developmental Cell

Year:

2015

Language:

english

File:

PDF, 5.10 MB

english, 2015

21

Transportin-SR Is Required for Proper Splicing of Resistance Genes and Plant Immunity

Xu, Shaohua, Zhang, Zhibin, Jing, Beibei, Gannon, Patrick, Ding, Jinmei, Xu, Fang, Li, Xin, Zhang, Yuelin, Dinesh-Kumar, Savithramma P.

Journal:

Year:

2011

Language:

english

File:

PDF, 1.27 MB

english, 2011

22

Novel Positive Regulatory Role for the SPL6 Transcription Factor in the N TIR-NB-LRR Receptor-Mediated Plant Innate Immunity

Padmanabhan, Meenu S., Ma, Shisong, Burch-Smith, Tessa M., Czymmek, Kirk, Huijser, Peter, Dinesh-Kumar, Savithramma P., Ausubel, Frederick M.

Journal:

Year:

2013

Language:

english

File:

PDF, 15.42 MB

english, 2013

23

Vertical Transmission Selects for Reduced Virulence in a Plant Virus and for Increased Resistance in the Host

Pagán, Israel, Montes, Nuria, Milgroom, Michael G., García-Arenal, Fernando, Dinesh-Kumar, Savithramma P.

Journal:

Year:

2014

Language:

english

File:

PDF, 1019 KB

english, 2014

24

Arabidopsis ATG6 is required to limit the pathogen-associated cell death response

Patel, Shalaka, Dinesh-Kumar, Savithramma P.

Journal:

Year:

2008

Language:

english

File:

PDF, 1.10 MB

english, 2008

25

The Mi-1-Mediated Pest Resistance Requires Hsp90 and Sgt1

Kishor K. Bhattarai, Qi Li, Yule Liu, Savithramma P. Dinesh-Kumar and Isgouhi Kaloshian

Journal:

PLANT PHYSIOLOGY

Year:

2007

Language:

english

File:

PDF, 2.34 MB

english, 2007

26

Arabidopsis Protein Microarrays for the High-Throughput Identification of Protein-Protein Interactions

Popescu, Sorina C., Snyder, Michael, Dinesh-Kumar, Savithramma P.

Journal:

Plant Signaling & Behavior

Year:

2007

Language:

english

File:

PDF, 498 KB

english, 2007

27

Integrated analysis of co-expressed MAP kinase substrates in Arabidopsis thaliana

Popescu, Sorina C., Popescu, George V., Snyder, Michael P., Dinesh-Kumar, Savithramma P.

Journal:

Plant Signaling & Behavior

Year:

2009

Language:

english

File:

PDF, 521 KB

english, 2009

28

Arabidopsis Microtubule-Associated Protein MAP65-3 Cross-Links Antiparallel Microtubules toward Their Plus Ends in the Phragmoplast via Its Distinct C-Terminal Microtubule Binding Domain

Chin-Min Kimmy Ho, Yuh-Ru Julie Lee, Lindsay D. Kiyama, Savithramma P. Dinesh-Kumar and Bo Liu

Journal:

Year:

2012

Language:

english

File:

PDF, 3.33 MB

english, 2012

29

Comparative analyses of ubiquitin-like ATG8 and cysteine protease ATG4 autophagy genes in the plant lineage and cross-kingdom processing of ATG8 by ATG4

Seo, Eunyoung, Woo, Jongchan, Park, Eunsook, Bertolani, Steven J., Siegel, Justin B., Choi, Doil, Dinesh-Kumar, Savithramma P.

Journal:

Year:

2016

Language:

english

File:

PDF, 1.44 MB

english, 2016

30

PARylation of the forkhead‐associated domain protein DAWDLE regulates plant immunity

Feng, Baomin, Ma, Shisong, Chen, Sixue, Zhu, Ning, Zhang, Shuxin, Yu, Bin, Yu, Yu, Le, Brandon, Chen, Xuemei, Dinesh‐Kumar, Savithramma P, Shan, Libo, He, Ping

Journal:

Year:

2016

Language:

english

File:

PDF, 2.44 MB

english, 2016

31

Novel Functional Genomics Approaches: A Promising Future in the Combat Against Plant Viruses

Fondong, Vincent N., Nagalakshmi, Ugrappa, Dinesh-Kumar, Savithramma P.

Journal:

Year:

2016

Language:

english

File:

PDF, 497 KB

english, 2016

32

Arabidopsis receptor-like cytoplasmic kinase BIK1: purification, crystallization and X-ray diffraction analysis

Lal, Neeraj K., Fisher, Andrew J., Dinesh-Kumar, Savithramma P.

Journal:

Acta Crystallographica Section F Structural Biology Communications

Year:

2016

Language:

english

File:

PDF, 747 KB

english, 2016

33

Foundational and translational research opportunities to improve plant health.

Michelmore, Richard W, Coaker, Gitta, Bart, Rebecca, Beattie, Gwyn A., Bent, Andrew, Bruce, Toby, Cameron, Duncan, Dangl, Jeff, Dinesh-Kumar, Savithramma, Edwards, Robert, Eves-van den Akker, Sebastia

Journal:

Molecular Plant-Microbe Interactions

Year:

2017

Language:

english

File:

PDF, 862 KB

english, 2017

34

Spatiotemporal monitoring of Pseudomonas effectors via type III secretion using split fluorescent protein fragments

Park, Eunsook, Lee, Hye-Young, Woo, Jongchan, Choi, Doil, Dinesh-Kumar, Savithramma P.

Journal:

Year:

2017

Language:

english

File:

PDF, 2.44 MB

english, 2017

35

Discovery of Novel Human Gene Regulatory Modules from Gene Co-expression and Promoter Motif Analysis

Ma, Shisong, Snyder, Michael, Dinesh-Kumar, Savithramma P.

Journal:

Scientific Reports

Year:

2017

Language:

english

File:

PDF, 1.87 MB

english, 2017

36

The Intracellular Immune Receptor Sw-5b Confers Broad-spectrum Resistance to Tospoviruses through Recognition of a Conserved 21-amino-acid Viral Effector Epitope

Zhu, Min, Jiang, Lei, Bai, Baohui, Zhao, Wenyang, Chen, Xiaojiao, Li, Jia, Liu, Yong, Chen, Zhengqiang, Wang, Boting, Wang, Chunli, Wu, Qian, Shen, Qian-Hua, Dinesh-Kumar, Savithramma P., Tao, Xiaoron

Journal:

Year:

2017

Language:

english

File:

PDF, 7.30 MB

english, 2017

37

Plant-microbe interactions: organelles and the cytoskeleton in action

Park, Eunsook, Nedo, Alexander, Caplan, Jeffrey L., Dinesh-Kumar, Savithramma P.

Journal:

New Phytologist

Year:

2017

Language:

english

File:

PDF, 3.03 MB

english, 2017

38

Rice Dwarf Virus P2 Protein Hijacks Auxin Signaling by Directly Targeting the Rice OsIAA10 Protein, Enhancing Viral Infection and Disease Development

Jin, Lian, Qin, Qingqing, Wang, Yu, Pu, Yingying, Liu, Lifang, Wen, Xing, Ji, Shaoyi, Wu, Jianguo, Wei, Chunhong, Ding, Biao, Li, Yi, Dinesh-Kumar, Savithramma P.

Journal:

Year:

2016

Language:

english

File:

PDF, 5.53 MB

english, 2016

39

Discovery of Stress Responsive DNA Regulatory Motifs in Arabidopsis

Ma, Shisong, Bachan, Shawn, Porto, Matthew, Bohnert, Hans J., Snyder, Michael, Dinesh-Kumar, Savithramma P., Zhou, Dongsheng

Journal:

Year:

2012

Language:

english

File:

PDF, 557 KB

english, 2012

40

Next-Generation Sequencing for Binary Protein–Protein Interactions

Suter, Bernhard, Zhang, Xinmin, Pesce, C. Gustavo, Mendelsohn, Andrew R., Dinesh-Kumar, Savithramma P., Mao, Jian-Hua

Journal:

Frontiers in Genetics

Year:

2015

Language:

english

File:

PDF, 921 KB

english, 2015

41

Dynamic coordination of plastid morphological change by cytoskeleton for chloroplast-nucleus communication during plant immune responses

Park, Eunsook, Caplan, Jeffrey L., Dinesh-Kumar, Savithramma P.

Journal:

Plant Signaling & Behavior

Year:

2018

Language:

english

File:

PDF, 1.44 MB

english, 2018

42

The Barley stripe mosaic virus γb protein promotes chloroplast-targeted replication by enhancing unwinding of RNA duplexes

Zhang, Kun, Zhang, Yongliang, Yang, Meng, Liu, Songyu, Li, Zhenggang, Wang, Xianbing, Han, Chenggui, Yu, Jialin, Li, Dawei, Dinesh-Kumar, Savithramma P.

Journal:

Year:

2017

Language:

english

File:

PDF, 39.42 MB

english, 2017

43

The MAP4 Kinase SIK1 Ensures Robust Extracellular ROS Burst and Antibacterial Immunity in Plants

Zhang, Meixiang, Chiang, Yi-Hsuan, Toruño, Tania Y., Lee, DongHyuk, Ma, Miaomiao, Liang, Xiangxiu, Lal, Neeraj K., Lemos, Mark, Lu, Yi-Ju, Ma, Shisong, Liu, Jun, Day, Brad, Dinesh-Kumar, Savithramma P

Journal:

Cell Host & Microbe

Year:

2018

Language:

english

File:

PDF, 3.33 MB

english, 2018

44

Plant A20/AN1 protein serves as the important hub to mediate antiviral immunity

Chang, Li, Chang, Ho-Hsiung, Chang, Jui-Che, Lu, Hsiang-Chia, Wang, Tan-Tung, Hsu, Duen-Wei, Tzean, Yuh, Cheng, An-Po, Chiu, Yi-Shu, Yeh, Hsin-Hung, Dinesh-Kumar, Savithramma P.

Journal:

Year:

2018

Language:

english

File:

PDF, 10.36 MB

english, 2018

45

An aromatic amino acid and associated helix in the C-terminus of the potato leafroll virus minor capsid protein regulate systemic infection and symptom expression

Xu, Yi, Da Silva, Washington Luis, Qian, Yajuan, Gray, Stewart M., Dinesh-Kumar, Savithramma P.

Journal:

Year:

2018

Language:

english

File:

PDF, 16.24 MB

english, 2018

46

A Plant Immune Receptor Adopts a Two-Step Recognition Mechanism to Enhance Viral Effector Perception

Li, Jia, Huang, Haining, Zhu, Min, Huang, Shen, Zhang, Wenhua, Dinesh-Kumar, Savithramma P., Tao, Xiaorong

Journal:

Molecular Plant

Year:

2019

File:

PDF, 2.36 MB

2019

47

βC1 protein encoded in geminivirus satellite concertedly targets MKK2 and MPK4 to counter host defense

Hu, Tao, Huang, Changjun, He, Yuting, Castillo-González, Claudia, Gui, Xiaojian, Wang, Yaqin, Zhang, Xiuren, Zhou, Xueping, Dinesh-Kumar, Savithramma P.

Journal:

Year:

2019

Language:

english

File:

PDF, 13.75 MB

english, 2019

48

A new mechanism for translational control in plants

Miller, W. Allen, Dinesh‐Kumar, Savithramma P.

Journal:

Year:

2019

Language:

english

File:

PDF, 244 KB

english, 2019

49

Perspectives on intracellular perception of plant viruses

Meier, Nathan, Hatch, Cameron, Nagalakshmi, Ugrappa, Dinesh‐Kumar, Savithramma P.

Journal:

Molecular Plant Pathology

Year:

2019

Language:

english

File:

PDF, 392 KB

english, 2019

50

Perspectives on intracellular perception of plant viruses

Meier, Nathan, Hatch, Cameron, Nagalakshmi, Ugrappa, Dinesh‐Kumar, Savithramma P.

Journal:

Molecular Plant Pathology

Year:

2019

File:

PDF, 392 KB

2019

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